The Confederate Navy had around 500 vessels the following is a list of information about the ship we know about.
CSS Albemarle
Commissiond April 17, 1863
Captured June 1863
CSS Charlston
Commissiond 1863
Abandoned 1865
CSS Columbia
Commissioned 1864
CSS Fredricksburg
Destroyed to avoid capture 1865
CSS Huntsville
Commissioned 1863
Sunk 1866
CSS Louisiana
1400 tons
abandoned 1862
CSS Manassas
378 tons
Sunk in 1862
CSS Milledgeville
Burned to avoid capture 1864
CSS Mississippi
Launched April 1862
CSS Muscogee
Incomplete
Burned to avoid capture
CSS Nashville
Built 1864
Surrendered May 1865
CSS Neuse
Launched 1864
Burned 1866